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Report for Sequence Feature Glyma09g21230

Feature Type:gene_model
Chromosome:Gm09
Start:26169051
stop:26175988
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g21230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G71070AT Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:26807440-26809152 REVERSE LENGTH=395 SoyBaseE_val: 0ISS
GO:0016051GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008375GO-mf Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
KOG0799 KOG Branching enzyme JGI ISS
PTHR19297Panther GLYCOSYLTRANSFERASE 14 FAMILY MEMBER JGI ISS
PTHR19297:SF2Panther GALACTOSYLTRANSFERASE-RELATED JGI ISS
PF02485PFAM Core-2/I-Branching enzyme JGI ISS
UniRef100_G7IAS1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7IAS1_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002338153UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338153 related cluster n=1 Tax=unknown RepID=UPI0002338153 SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g21230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g21230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g119700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g21230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g21230
>Glyma09g21230.1   sequence type=CDS   gene model=Glyma09g21230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTTGAGAGAAAATGGCTCTTCACCCTCTTCACTGCAGCATTCCTCTCCTTCATCATTCTCATGTTCTCTTCCTTCTCTTGCTTCACATCCCCTATGCCCTTTCCCTCTATTGTCCACTATGGTCCACACCACCCTCCTGCTTTTGCCTACTTCATATCCGGTGGCAATAGGGACAGCGACCGGATCTTCCGGTTGCTGCTGGCGGTGTACCACCCCAGGAACCGTTACTTGCTCCACCTTGGGATGGATGCCAGGGATGAAGAGAGGCAAAGGCTGGCGGCGGCCACCATGTCGGTGCCGGCGATTCGTGCCTTTCGGAACGTGGATGTGGTGGGGAAGGCTGATTATGTGACCTACTTGGGGTCATCCAATGTGGCTGTTGCTCTCAGGGCTGCTTCTGTGATGATGAAGTTGGATGGAGGATGGGACTGGTTTGTGACCTTGAGTGCTCGGGATTATCCCCTTGTCACCCAGGATGATTTGTCTCATGTTTTCTCTTCTGTTCGGAGGGACCTCAATTTCATTGATCACACCAGCGACCTTGGATGGAAAGAAAAGGACAGGTTCCAGCCTATCGTAGTTGACCCAGGACTATATTTAGCCAGGAGAAGTCAAATTTTTCTAGCTACGCAGAAGCGGGATACACCTGATGCATTCAATCTTTTCACAGGTTCACCATGGGTCATCTTGAGCCGATCCTTCCTGGAGTATTGCATATTTGGCTGGGATAATTTACCTCGAACGCTCCTGATGTATTTTACAAATGTCAAGTTATCCCAAGAAGGTTACTTTCATTCGGTCGTTTGCAATGCACCAGAATTCAAGAACACAACAGTAAATGGTGACTTACGGTACATGATCTGGGACAATCCTCCGAAGATGGAGCCACTTTTCCTTAATGTATCTGTTTATGATCAAATGGTAGAAAGTGGTGCTGCTTTTGCTAGACAGTTTGAAGTAGGTGACCGGGTTTTGGACATGATCGATAAAAAGATACTTAAGCGTGGGCGTAATCAAGCTGTGCCAGGAGCATGGTGCTCGGGCAGGAGGAGCTGGTGGGTGGATCCATGCTCACAATGGGGGGATGATGTCACTATTCTGAAGCCAGGCCCTCAGGCTAAGAAGCTCGAGGAGTCTGTTTCGAGCCTTCTTGACGATTGGAGCTCACACACAAATCAGTGCCTTATTACCAGTGAAGAGACAGAAGACTAG
Predicted protein sequences of Glyma09g21230
>Glyma09g21230.1   sequence type=predicted peptide   gene model=Glyma09g21230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVERKWLFTLFTAAFLSFIILMFSSFSCFTSPMPFPSIVHYGPHHPPAFAYFISGGNRDSDRIFRLLLAVYHPRNRYLLHLGMDARDEERQRLAAATMSVPAIRAFRNVDVVGKADYVTYLGSSNVAVALRAASVMMKLDGGWDWFVTLSARDYPLVTQDDLSHVFSSVRRDLNFIDHTSDLGWKEKDRFQPIVVDPGLYLARRSQIFLATQKRDTPDAFNLFTGSPWVILSRSFLEYCIFGWDNLPRTLLMYFTNVKLSQEGYFHSVVCNAPEFKNTTVNGDLRYMIWDNPPKMEPLFLNVSVYDQMVESGAAFARQFEVGDRVLDMIDKKILKRGRNQAVPGAWCSGRRSWWVDPCSQWGDDVTILKPGPQAKKLEESVSSLLDDWSSHTNQCLITSEETED*






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